|
|||||||||
Mapping of H1 Cell Line smRNA-Seq Data
Illumina reads produced by smRNA-Seq on the H1 Cell Line, Library H1EScd1 batch2 vial1 were mapped to the human genome using Pash.
Project News:
2010/11/5: ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.1-2.xml' uploaded
alias: HS1295-1_42ERCAAXX.hg19.level.1
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.H1.smRNA-Seq.H1EScd1_batch2_vial1.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: smRNA-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 100 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 100 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 2 PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 24.4 PERCENT_READS_MAPPING_TO_REPEATMASKER_RNA_REPEATS: 34.9 |
|||||||||
|
|||||||||