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Raw Signal Density Graphs of Stomach Smooth Muscle Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from Stomach Smooth Muscle, Donor 28 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: Lib:XZ:20100423:19--ChIP:XZ:70100407:08:stomach smooth muscle:H3K4Me1.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Stomach_Smooth_Muscle.H3K4me1.28.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: SSM H3K4me1 28
BROWSER_TRACK_DESCRIPTION: BI Stomach Smooth Muscle Histone H3K4me1 Donor 28 EA Release 2
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 30
FINDPEAKS_SCORE: 0.3289
FINDPEAKS_PERCENTILE: 42
HOTSPOT_SCORE: 0.354
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.9854
IROC_PERCENTILE: 50
POISSON_SCORE: 0.5238
POISSON_PERCENTILE: 40
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Stomach_Smooth_Muscle.H3K4me1.28.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: SSM H3K4me1 28
BROWSER_TRACK_DESCRIPTION: BI Stomach Smooth Muscle Histone H3K4me1 Donor 28 EA Release 2
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 30
FINDPEAKS_SCORE: 0.3289
FINDPEAKS_PERCENTILE: 42
HOTSPOT_SCORE: 0.354
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.9854
IROC_PERCENTILE: 50
POISSON_SCORE: 0.5238
POISSON_PERCENTILE: 40
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