|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of CD34 Primary Cells Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from CD34 Primary Cells, Donor CD34_39889 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: 30B1DAAXX090508-7-S-30ELUAAXX090512-5-S.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD34_Primary_Cells.H3K4me1.CD34_39889.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: CD34 H3K4me1 89
BROWSER_TRACK_DESCRIPTION: BI CD34 Primary Cells Histone H3K4me1 Donor CD34_39889 EA Release 2
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 30
FINDPEAKS_SCORE: 0.5514
FINDPEAKS_PERCENTILE: 84
HOTSPOT_SCORE: 0.5216
HOTSPOT_PERCENTILE: 81
IROC_SCORE: 0.999
IROC_PERCENTILE: 93
POISSON_SCORE: 0.5856
POISSON_PERCENTILE: 63
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD34_Primary_Cells.H3K4me1.CD34_39889.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: CD34 H3K4me1 89
BROWSER_TRACK_DESCRIPTION: BI CD34 Primary Cells Histone H3K4me1 Donor CD34_39889 EA Release 2
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 30
FINDPEAKS_SCORE: 0.5514
FINDPEAKS_PERCENTILE: 84
HOTSPOT_SCORE: 0.5216
HOTSPOT_PERCENTILE: 81
IROC_SCORE: 0.999
IROC_PERCENTILE: 93
POISSON_SCORE: 0.5856
POISSON_PERCENTILE: 63
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |