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Raw Signal Density Graphs of Mobilized CD34 Primary Cells ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Mobilized CD34 Primary Cells, Donor UW RO 01549 were processed into density graphs of raw signal representing the aligned read density.


Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded



alias: Lib:RI:20100524:08--ChIP:MA:20100517:08:Mobilized CD34:WCE.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Mobilized_CD34_Primary_Cells.Input.UW_RO_01549.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: MCD34 Input 49
BROWSER_TRACK_DESCRIPTION: BI Mobilized CD34 Primary Cells ChIP-Seq Input Donor UW RO 01549 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.0065
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.0042
HOTSPOT_PERCENTILE: 9
IROC_SCORE: 0.0
IROC_PERCENTILE: 18
POISSON_SCORE: 0.2414
POISSON_PERCENTILE: 60

 

 


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