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Raw Signal Density Graphs of Adipose Derived Mesenchymal Stem Cell Cultured Cells Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from Adipose Derived Mesenchymal Stem Cell Cultured Cells, Donor 1 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: Lib:XZ:20100423:10--ChIP:XZ:20100331:10:ADMSC:H3K4Me1.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: ADMSC H3K4me1 1
BROWSER_TRACK_DESCRIPTION: BI Adipose Derived Mesenchymal Stem Cell Cultured Cells Histone H3K4me1 Donor 1 EA Release 2
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 30
FINDPEAKS_SCORE: 0.679
FINDPEAKS_PERCENTILE: 95
HOTSPOT_SCORE: 0.6144
HOTSPOT_PERCENTILE: 98
IROC_SCORE: 0.999
IROC_PERCENTILE: 93
POISSON_SCORE: 0.7967
POISSON_PERCENTILE: 100
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: ADMSC H3K4me1 1
BROWSER_TRACK_DESCRIPTION: BI Adipose Derived Mesenchymal Stem Cell Cultured Cells Histone H3K4me1 Donor 1 EA Release 2
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 30
FINDPEAKS_SCORE: 0.679
FINDPEAKS_PERCENTILE: 95
HOTSPOT_SCORE: 0.6144
HOTSPOT_PERCENTILE: 98
IROC_SCORE: 0.999
IROC_PERCENTILE: 93
POISSON_SCORE: 0.7967
POISSON_PERCENTILE: 100
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