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Raw Signal Density Graphs of Muscle Satellite Cultured Cells ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Muscle Satellite Cultured Cells, Donor hSKM-2 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: Lib:MC:20100511:16--ChIP:MC:20100505:16:hSKM:WCE.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-2.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: MS Input 2
BROWSER_TRACK_DESCRIPTION: BI Muscle Satellite Cultured Cells ChIP-Seq Input Donor hSKM-2 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.0052
FINDPEAKS_PERCENTILE: 7
HOTSPOT_SCORE: 0.0303
HOTSPOT_PERCENTILE: 41
IROC_SCORE: 0.9182
IROC_PERCENTILE: 68
POISSON_SCORE: 0.2244
POISSON_PERCENTILE: 45
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-2.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: MS Input 2
BROWSER_TRACK_DESCRIPTION: BI Muscle Satellite Cultured Cells ChIP-Seq Input Donor hSKM-2 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.0052
FINDPEAKS_PERCENTILE: 7
HOTSPOT_SCORE: 0.0303
HOTSPOT_PERCENTILE: 41
IROC_SCORE: 0.9182
IROC_PERCENTILE: 68
POISSON_SCORE: 0.2244
POISSON_PERCENTILE: 45
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