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Raw Signal Density Graphs of Pancreatic Islets Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from Pancreatic Islets, Donor pancreatic islets normal_3/27/09 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: 30J03AAXX090718-5-S.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Pancreatic_Islets.H3K4me3.pancreatic_islets_normal_3_27_09.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: PI H3K4me3 27
BROWSER_TRACK_DESCRIPTION: BI Pancreatic Islets Histone H3K4me3 Donor pancreatic islets normal_3/27/09 EA Release 2
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED: 50
FINDPEAKS_SCORE: 0.4858
FINDPEAKS_PERCENTILE: 68
HOTSPOT_SCORE: 0.5002
HOTSPOT_PERCENTILE: 70
IROC_SCORE: 0.9966
IROC_PERCENTILE: 21
POISSON_SCORE: 0.5515
POISSON_PERCENTILE: 65
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Pancreatic_Islets.H3K4me3.pancreatic_islets_normal_3_27_09.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: PI H3K4me3 27
BROWSER_TRACK_DESCRIPTION: BI Pancreatic Islets Histone H3K4me3 Donor pancreatic islets normal_3/27/09 EA Release 2
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED: 50
FINDPEAKS_SCORE: 0.4858
FINDPEAKS_PERCENTILE: 68
HOTSPOT_SCORE: 0.5002
HOTSPOT_PERCENTILE: 70
IROC_SCORE: 0.9966
IROC_PERCENTILE: 21
POISSON_SCORE: 0.5515
POISSON_PERCENTILE: 65
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