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Mapping of Colonic Mucosa ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on Colonic Mucosa, Donor 32 were mapped to the human genome using Pash.
Project News:
2010/11/2: ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib:XZ:20100513:07--ChIP:XZ:20100503:07:colonic mucosa:WCE.hg19.level.1
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: BI.Colonic_Mucosa.Input.32.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 2 NUMBER_OF_Input_EXPERIMENTS_SCORED: 40 FINDPEAKS_SCORE: 0.0059 FINDPEAKS_PERCENTILE: 19 HOTSPOT_SCORE: 0.0221 HOTSPOT_PERCENTILE: 36 IROC_SCORE: 0.9671 IROC_PERCENTILE: 79 POISSON_SCORE: 0.1808 POISSON_PERCENTILE: 15 |
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