|
|
| Home | Browser | Tools | Log Out |
Help
|
Mapping of Muscle Satellite Cultured Cells ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on Muscle Satellite Cultured Cells, Donor hSKM-3 were mapped to the human genome using Pash.
Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib:MC:20100222:16--ChIP:MC:20100216:16:hSKM:WCE.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-3.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.0059
FINDPEAKS_PERCENTILE: 19
HOTSPOT_SCORE: 0.0379
HOTSPOT_PERCENTILE: 44
IROC_SCORE: 0.9548
IROC_PERCENTILE: 74
POISSON_SCORE: 0.21
POISSON_PERCENTILE: 36
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Muscle_Satellite_Cultured_Cells.Input.hSKM-3.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.0059
FINDPEAKS_PERCENTILE: 19
HOTSPOT_SCORE: 0.0379
HOTSPOT_PERCENTILE: 44
IROC_SCORE: 0.9548
IROC_PERCENTILE: 74
POISSON_SCORE: 0.21
POISSON_PERCENTILE: 36
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|