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Mapping of H1 Cell Line ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on the H1 Cell Line, Library Solexa-10531 were mapped to the human genome using Pash.
Project News:
2010/11/2: ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: 314G6AAXX090406-5-S.hg19.level.1
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: BI.H1.Input.Solexa-10531.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 2 NUMBER_OF_Input_EXPERIMENTS_SCORED: 40 FINDPEAKS_SCORE: 0.0094 FINDPEAKS_PERCENTILE: 48 HOTSPOT_SCORE: 0.0894 HOTSPOT_PERCENTILE: 73 IROC_SCORE: 0.3785 IROC_PERCENTILE: 27 POISSON_SCORE: 0.1752 POISSON_PERCENTILE: 13 |
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