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Mapping of Skeletal Muscle Histone H3K4me1 ChIP-Seq Data
Illumina reads produced by Histone H3K4me1 ChIP-Seq on Skeletal Muscle, Donor 19 were mapped to the human genome using Pash.
Project News:
2010/11/2:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib:XZ:20100423:03--ChIP:XZ:20100331:03:Skeletal muscle:H3K4Me1.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Skeletal_Muscle.H3K4me1.19.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 30
FINDPEAKS_SCORE: 0.4017
FINDPEAKS_PERCENTILE: 65
HOTSPOT_SCORE: 0.4091
HOTSPOT_PERCENTILE: 65
IROC_SCORE: 0.9899
IROC_PERCENTILE: 60
POISSON_SCORE: 0.6257
POISSON_PERCENTILE: 79
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Skeletal_Muscle.H3K4me1.19.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 30
FINDPEAKS_SCORE: 0.4017
FINDPEAKS_PERCENTILE: 65
HOTSPOT_SCORE: 0.4091
HOTSPOT_PERCENTILE: 65
IROC_SCORE: 0.9899
IROC_PERCENTILE: 60
POISSON_SCORE: 0.6257
POISSON_PERCENTILE: 79
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