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Raw Signal Density Graphs of IMR90 Cell Line ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the IMR90 Cell Line, Library LL-I1 were processed into density graphs of raw signal representing the aligned read density.


Project News:
2010/11/1:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded



alias: renlab.Input.IMR90-01.01.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.IMR90.Input.LL-I1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: IMR90 Input LLI1
BROWSER_TRACK_DESCRIPTION: UCSD IMR90 Cell Line ChIP-Seq Input Library LL-I1 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 67
FINDPEAKS_SCORE: 0.1297
FINDPEAKS_PERCENTILE: 94
HOTSPOT_SCORE: 0.244
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.9075
IROC_PERCENTILE: 66
POISSON_SCORE: 0.3871
POISSON_PERCENTILE: 93

 

 


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