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Raw Signal Density Graphs of H1 Cell Line Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from the H1 Cell Line, Library LL228 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/1: ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me1.CDI-01.01.hg19.level.2
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.H1.H3K4me1.LL228.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 2 BROWSER_TRACK_NAME: H1 H3K4me1 28 BROWSER_TRACK_DESCRIPTION: UCSD H1 Cell Line Histone H3K4me1 Library LL228 EA Release 2 NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED: 43 FINDPEAKS_SCORE: 0.0458 FINDPEAKS_PERCENTILE: 7 HOTSPOT_SCORE: 0.1997 HOTSPOT_PERCENTILE: 12 IROC_SCORE: 0.7639 IROC_PERCENTILE: 5 POISSON_SCORE: 0.4372 POISSON_PERCENTILE: 9 |
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