|
|
| Home | Browser | Tools | Log Out |
Help
|
Raw Signal Density Graphs of H1 Cell Line Histone H2BK15ac ChIP-Seq Data
Illumina Histone H2BK15ac ChIP-Seq read mappings from the H1 Cell Line, Library SAK204 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/1:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H2BK15ac.hESC-02.01.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1.H2BK15ac.SAK204.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 H2BK15ac 04
BROWSER_TRACK_DESCRIPTION: UCSD H1 Cell Line Histone H2BK15ac Library SAK204 EA Release 2
NUMBER_OF_H2BK15ac_EXPERIMENTS_SCORED: 5
FINDPEAKS_SCORE: 0.3599
FINDPEAKS_PERCENTILE: 60
HOTSPOT_SCORE: 0.1444
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.8011
IROC_PERCENTILE: 40
POISSON_SCORE: 0.4506
POISSON_PERCENTILE: 40
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1.H2BK15ac.SAK204.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 H2BK15ac 04
BROWSER_TRACK_DESCRIPTION: UCSD H1 Cell Line Histone H2BK15ac Library SAK204 EA Release 2
NUMBER_OF_H2BK15ac_EXPERIMENTS_SCORED: 5
FINDPEAKS_SCORE: 0.3599
FINDPEAKS_PERCENTILE: 60
HOTSPOT_SCORE: 0.1444
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.8011
IROC_PERCENTILE: 40
POISSON_SCORE: 0.4506
POISSON_PERCENTILE: 40
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|