|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of Breast vHMEC ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Breast vHMEC, Donor RM035, Library HS1995 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/1:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: HS1995-1_60065AAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_vHMEC.Input.RM035.HS1995.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: Bv Input 35 95
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD Breast vHMEC ChIP-Seq Input Donor RM035 Library HS1995 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 67
FINDPEAKS_SCORE: 0.0131
FINDPEAKS_PERCENTILE: 63
HOTSPOT_SCORE: 0.019
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.0
IROC_PERCENTILE: 18
POISSON_SCORE: 0.2241
POISSON_PERCENTILE: 43
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_vHMEC.Input.RM035.HS1995.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: Bv Input 35 95
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD Breast vHMEC ChIP-Seq Input Donor RM035 Library HS1995 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED: 67
FINDPEAKS_SCORE: 0.0131
FINDPEAKS_PERCENTILE: 63
HOTSPOT_SCORE: 0.019
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.0
IROC_PERCENTILE: 18
POISSON_SCORE: 0.2241
POISSON_PERCENTILE: 43
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |