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Raw Signal Density Graphs of H1 Cell Line Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from the H1 Cell Line, Library H1EScd2-me3K4-C were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/1:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: HS1345-1_305H8AAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.H3K4me3.H1EScd2-me3K4-C.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 H3K4me3 C
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line Histone H3K4me3 Library H1EScd2-me3K4-C EA Release 2
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED: 62
FINDPEAKS_SCORE: 0.738
FINDPEAKS_PERCENTILE: 94
HOTSPOT_SCORE: 0.7097
HOTSPOT_PERCENTILE: 95
IROC_SCORE: 0.9999
IROC_PERCENTILE: 74
POISSON_SCORE: 0.7578
POISSON_PERCENTILE: 95
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.H3K4me3.H1EScd2-me3K4-C.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 H3K4me3 C
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line Histone H3K4me3 Library H1EScd2-me3K4-C EA Release 2
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED: 62
FINDPEAKS_SCORE: 0.738
FINDPEAKS_PERCENTILE: 94
HOTSPOT_SCORE: 0.7097
HOTSPOT_PERCENTILE: 95
IROC_SCORE: 0.9999
IROC_PERCENTILE: 74
POISSON_SCORE: 0.7578
POISSON_PERCENTILE: 95
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