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Mapping of H1 Cell Line Histone H3K36me3 ChIP-Seq Data
Illumina reads produced by Histone H3K36me3 ChIP-Seq on the H1 Cell Line, Library H1EScd1-me3K36-A were mapped to the human genome using Pash.
Project News:
2010/11/1: ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded
alias: HS1032-1_30WLMAAXX-HS1032-1_305H8AAXX.hg19.level.1
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.H1.H3K36me3.H1EScd1-me3K36-A.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 2 NUMBER_OF_H3K36me3_EXPERIMENTS_SCORED: 54 FINDPEAKS_SCORE: 0.2095 FINDPEAKS_PERCENTILE: 41 HOTSPOT_SCORE: 0.245 HOTSPOT_PERCENTILE: 45 IROC_SCORE: 0.9602 IROC_PERCENTILE: 46 POISSON_SCORE: 0.4109 POISSON_PERCENTILE: 22 |
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