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Mapping of H1 Cell Line mRNA-Seq Data
Illumina reads produced by mRNA-Seq on the H1 Cell Line, Library H1EScd1 batch2 vial2 were mapped to the human genome using Pash.
Project News:
2010/10/28:
ANALYSIS XML file 'ucsf-ubc.mrna-seq.level.1.xml' uploaded
alias: HS1272-1_612FTAAXX-HS1272-1_42VR1AAXX.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.H1.mRNA-Seq.H1EScd1_batch2_vial2.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED: 4
PERCENT_READS_MAPPING_TO_UCSC_GENES: 89.50
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 25
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.H1.mRNA-Seq.H1EScd1_batch2_vial2.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED: 4
PERCENT_READS_MAPPING_TO_UCSC_GENES: 89.50
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 25
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