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Mapping of CD4 Naive Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on CD4 Naive Primary Cells, Donor TC007 were mapped to the human genome using Pash.


Project News:
2010/10/26:
ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded



alias: HS2632-1_705WMAAXX-HS2632-1_623WAAAXX.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.CD4_Naive_Primary_Cells.MeDIP-Seq.TC007.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.3651
FINDPEAKS_PERCENTILE: 70
HOTSPOT_SCORE: 0.4174
HOTSPOT_PERCENTILE: 83
IROC_SCORE: 0.9748
IROC_PERCENTILE: 83
POISSON_SCORE: 0.6982
POISSON_PERCENTILE: 62

 

 


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