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Mapping of H1 Cell Line MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on the H1 Cell Line, Library HS1303 were mapped to the human genome using Pash.
Project News:
2010/10/26:
ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded
alias: HS1303-1_305H8AAXX-HS1303-1_42EMFAAXX-HS1303-1_42F2TAAXX.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.H1.MeDIP-Seq.HS1303.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.2164
FINDPEAKS_PERCENTILE: 37
HOTSPOT_SCORE: 0.3021
HOTSPOT_PERCENTILE: 37
IROC_SCORE: 0.9578
IROC_PERCENTILE: 54
POISSON_SCORE: 0.6239
POISSON_PERCENTILE: 4
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.H1.MeDIP-Seq.HS1303.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.2164
FINDPEAKS_PERCENTILE: 37
HOTSPOT_SCORE: 0.3021
HOTSPOT_PERCENTILE: 37
IROC_SCORE: 0.9578
IROC_PERCENTILE: 54
POISSON_SCORE: 0.6239
POISSON_PERCENTILE: 4
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