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Mapping of Breast vHMEC MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Breast vHMEC, Donor RM035 were mapped to the human genome using Pash.
Project News:
2010/10/26: ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded
alias: HS1768-1_612T0AAXX-HS1768-1_430L5AAXX.hg19.level.1
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Breast_vHMEC.MeDIP-Seq.RM035.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: MeDIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 2 NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24 FINDPEAKS_SCORE: 0.4936 FINDPEAKS_PERCENTILE: 95 HOTSPOT_SCORE: 0.4648 HOTSPOT_PERCENTILE: 95 IROC_SCORE: 0.9868 IROC_PERCENTILE: 95 POISSON_SCORE: 0.7168 POISSON_PERCENTILE: 87 |
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