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Mapping of CD8 Naive Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on CD8 Naive Primary Cells, Donor TC003 were mapped to the human genome using Pash.
Project News:
2010/10/26: ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded
alias: HS1774-1_612TYAAXX-HS1774-1_42TCVAAXX.hg19.level.1
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.CD8_Naive_Primary_Cells.MeDIP-Seq.TC003.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: MeDIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 2 NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24 FINDPEAKS_SCORE: 0.3225 FINDPEAKS_PERCENTILE: 54 HOTSPOT_SCORE: 0.3667 HOTSPOT_PERCENTILE: 58 IROC_SCORE: 0.9637 IROC_PERCENTILE: 70 POISSON_SCORE: 0.6804 POISSON_PERCENTILE: 41 |
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