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Raw Signal Density Graphs of H1 Cell Line MeDIP-Seq Data
Illumina MeDIP-Seq read mappings from the H1 Cell Line, Library HS1303 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/10/26:
ANALYSIS XML file 'ucsf-ubc.medip.level.2.xml' uploaded
alias: HS1303-1_305H8AAXX-HS1303-1_42EMFAAXX-HS1303-1_42F2TAAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.MeDIP-Seq.HS1303.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 MeDIP 03
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line MeDIP-Seq Library HS1303 EA Release 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.2164
FINDPEAKS_PERCENTILE: 37
HOTSPOT_SCORE: 0.3021
HOTSPOT_PERCENTILE: 37
IROC_SCORE: 0.9578
IROC_PERCENTILE: 54
POISSON_SCORE: 0.6239
POISSON_PERCENTILE: 4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.MeDIP-Seq.HS1303.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 MeDIP 03
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line MeDIP-Seq Library HS1303 EA Release 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.2164
FINDPEAKS_PERCENTILE: 37
HOTSPOT_SCORE: 0.3021
HOTSPOT_PERCENTILE: 37
IROC_SCORE: 0.9578
IROC_PERCENTILE: 54
POISSON_SCORE: 0.6239
POISSON_PERCENTILE: 4
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