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Raw Signal Density Graphs of Breast Stem Cells MeDIP-Seq Data
Illumina MeDIP-Seq read mappings from Breast Stem Cells, Donor RM035 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/10/26:
ANALYSIS XML file 'ucsf-ubc.medip.level.2.xml' uploaded
alias: HS1395-1_42TE4AAXX-HS1395-1_42TEUAAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_Stem_Cells.MeDIP-Seq.RM035.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: BSC MeDIP 35
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD Breast Stem Cells MeDIP-Seq Donor RM035 EA Release 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.5108
FINDPEAKS_PERCENTILE: 100
HOTSPOT_SCORE: 0.4841
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.9872
IROC_PERCENTILE: 100
POISSON_SCORE: 0.7204
POISSON_PERCENTILE: 95
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_Stem_Cells.MeDIP-Seq.RM035.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: BSC MeDIP 35
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD Breast Stem Cells MeDIP-Seq Donor RM035 EA Release 2
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED: 24
FINDPEAKS_SCORE: 0.5108
FINDPEAKS_PERCENTILE: 100
HOTSPOT_SCORE: 0.4841
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.9872
IROC_PERCENTILE: 100
POISSON_SCORE: 0.7204
POISSON_PERCENTILE: 95
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