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Mapping of Fetal Heart Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Heart, Donor H-22727, Library DS12810 were mapped to the human genome using Pash.
Project News:
2010/10/22:
ANALYSIS XML file 'uw.chromatinAccessibility.level1.release2.xml' uploaded
alias: DS12810.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Heart.ChromatinAccessibility.H-22727.DS12810.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.5488
FINDPEAKS_PERCENTILE: 45
HOTSPOT_SCORE: 0.3944
HOTSPOT_PERCENTILE: 37
IROC_SCORE: 0.9944
IROC_PERCENTILE: 22
POISSON_SCORE: 0.5928
POISSON_PERCENTILE: 87
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Heart.ChromatinAccessibility.H-22727.DS12810.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.5488
FINDPEAKS_PERCENTILE: 45
HOTSPOT_SCORE: 0.3944
HOTSPOT_PERCENTILE: 37
IROC_SCORE: 0.9944
IROC_PERCENTILE: 22
POISSON_SCORE: 0.5928
POISSON_PERCENTILE: 87
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