|
|
| Home | Browser | Tools | Log Out |
Help
|
Mapping of Mobilized CD34 Primary Cells Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Mobilized CD34 Primary Cells, Donor RO 01492, Library DS14206 were mapped to the human genome using Pash.
Project News:
2010/10/22:
ANALYSIS XML file 'uw.chromatinAccessibility.level1.release2.xml' uploaded
alias: DS14206.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Mobilized_CD34_Primary_Cells.ChromatinAccessibility.RO_01492.DS14206.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.5009
FINDPEAKS_PERCENTILE: 30
HOTSPOT_SCORE: 0.4157
HOTSPOT_PERCENTILE: 47
IROC_SCORE: 0.9976
IROC_PERCENTILE: 65
POISSON_SCORE: 0.4719
POISSON_PERCENTILE: 32
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Mobilized_CD34_Primary_Cells.ChromatinAccessibility.RO_01492.DS14206.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.5009
FINDPEAKS_PERCENTILE: 30
HOTSPOT_SCORE: 0.4157
HOTSPOT_PERCENTILE: 47
IROC_SCORE: 0.9976
IROC_PERCENTILE: 65
POISSON_SCORE: 0.4719
POISSON_PERCENTILE: 32
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|