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Mapping of IMR90 Cell Line Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on the IMR90 Cell Line, Library DS11759 were mapped to the human genome using Pash.
Project News:
2010/10/22:
ANALYSIS XML file 'uw.chromatinAccessibility.level1.release2.xml' uploaded
alias: DS11759.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.IMR90.ChromatinAccessibility.DS11759.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.3846
FINDPEAKS_PERCENTILE: 5
HOTSPOT_SCORE: 0.2914
HOTSPOT_PERCENTILE: 5
IROC_SCORE: 0.9966
IROC_PERCENTILE: 37
POISSON_SCORE: 0.3873
POISSON_PERCENTILE: 10
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.IMR90.ChromatinAccessibility.DS11759.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED: 40
FINDPEAKS_SCORE: 0.3846
FINDPEAKS_PERCENTILE: 5
HOTSPOT_SCORE: 0.2914
HOTSPOT_PERCENTILE: 5
IROC_SCORE: 0.9966
IROC_PERCENTILE: 37
POISSON_SCORE: 0.3873
POISSON_PERCENTILE: 10
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