|
|
| Home | Browser | Tools | Log Out |
Help
|
Mapping of H1 mRNA-Seq Data
Illumina reads produced by mRNA-Seq in the H1 cell line were mapped to the human genome (NCBI Build 36.1) using Pash.
Project News:
2009/12/28:
ANALYSIS XML file 'ucsf-ubc.analysis.mRNA-seq.xml' uploaded
alias: UCSF-UBC.H1.mRNA-seq.Level1.5
Analysis Center: EDACC
Experiment Refname: HS1272-1_612FTAAXX
Analysis File Type: .bam
Analysis File Name: UCSF-UBC.H1.mRNA-seq.Run106059Lane6.bam
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
Analysis Center: EDACC
Experiment Refname: HS1272-1_612FTAAXX
Analysis File Type: .bam
Analysis File Name: UCSF-UBC.H1.mRNA-seq.Run106059Lane6.bam
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|