Mapping of H1 mRNA-Seq Data
Illumina reads produced by mRNA-Seq in the H1 cell line were mapped to the human genome (NCBI Build 36.1) using Pash.
ANALYSIS XML file 'ucsf-ubc.analysis.mRNA-seq.xml' uploaded
Analysis Center: EDACC
Experiment Refname: HS1272-1_612FTAAXX
Analysis File Type: .bam
Analysis File Name: UCSF-UBC.H1.mRNA-seq.Run106059Lane6.bam
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.