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Mapping of H1 smRNA-Seq Data
Illumina reads produced by smRNA-Seq in the H1 cell line were mapped to the human genome (NCBI Build 36.1) using Pash.
Project News:
2009/12/22: ANALYSIS XML file 'ucsf-ubc.analysis.smRNA-seq.xml' uploaded
alias: UCSF-UBC.smRNA-seq.Level1.1
Analysis Center: EDACC Experiment Refname: HS1295-1_42ERCAAXX Analysis File Type: .bam Analysis File Name: UCSF-UBC.H1.smRNA.Run104536Lane5.bam DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: smRNA-Seq SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None |
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