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Raw Signal Density Graphs of CD4+ CD25- CD45RA+ Naive Primary Cells H3K4me1 ChIP-Seq Data
Illumina H3K4me1 ChIP-Seq read mappings from CD4+ CD25- CD45RA+ Naive Primary Cells, Donor Donor 332, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/7/15:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 2211.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD4+_CD25-_CD45RA+_Naive_Primary_Cells.H3K4me1.Donor_332.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: CCCNN H3K4me1 32 11
BROWSER_TRACK_DESCRIPTION: BI CD4+ CD25- CD45RA+ Naive Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2211 EA Release 9
NUMBER_OF_MAPPED_READS: 9,296,840
FINDPEAKS_SCORE: 0.3341
FINDPEAKS_PERCENTILE: 63
HOTSPOT_SCORE: 0.3816
HOTSPOT_PERCENTILE: 59
IROC_SCORE: 0.9906
IROC_PERCENTILE: 74
POISSON_SCORE: 0.4787
POISSON_PERCENTILE: 56
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD4+_CD25-_CD45RA+_Naive_Primary_Cells.H3K4me1.Donor_332.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: CCCNN H3K4me1 32 11
BROWSER_TRACK_DESCRIPTION: BI CD4+ CD25- CD45RA+ Naive Primary Cells Histone H3K4me1 Donor 332 Library DNA_Lib 2211 EA Release 9
NUMBER_OF_MAPPED_READS: 9,296,840
FINDPEAKS_SCORE: 0.3341
FINDPEAKS_PERCENTILE: 63
HOTSPOT_SCORE: 0.3816
HOTSPOT_PERCENTILE: 59
IROC_SCORE: 0.9906
IROC_PERCENTILE: 74
POISSON_SCORE: 0.4787
POISSON_PERCENTILE: 56
MAXIMUM_REPLICATE_CORRELATION: NA
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