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Mapping of H9 Derived Neuronal Progenitor Cultured Cells H3K4me1 ChIP-Seq Data
Illumina reads produced by H3K4me1 ChIP-Seq on the H9 Derived Neuronal Progenitor Cultured Cells, Library Lib:RI:20101012:07--ChIP:MA:20100927:07:hNP (ES H9 derived Nuronal Progenitors):H3K4Me1, were mapped to the human genome using Pash.


Project News:
2013/7/15:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded



alias: Lib:RI:20101012:07--ChIP:MA:20100927:07:hNP (ES H9 derived Nuronal Progenitors):H3K4Me1.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.H9_Derived_Neuronal_Progenitor_Cultured_Cells.H3K4me1.113.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 28,117,928
FINDPEAKS_SCORE: 0.2838
FINDPEAKS_PERCENTILE: 54
HOTSPOT_SCORE: 0.3371
HOTSPOT_PERCENTILE: 54
IROC_SCORE: 0.9847
IROC_PERCENTILE: 65
POISSON_SCORE: 0.443
POISSON_PERCENTILE: 46
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


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