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Mapping of Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input ChIP-Seq Data
Illumina reads produced by Input ChIP-Seq on Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells, Donor 60, were mapped to the human genome using Pash.
Project News:
2013/7/15:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib EpiLabSPL Row 1727-Lib:MC:20100729:11--ChIP:MC:20100726:11:chondrogenic dif cells:H3K27Me3.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Chondrocytes_from_Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.60.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 62,557,620
FINDPEAKS_SCORE: NA
FINDPEAKS_PERCENTILE: NA
HOTSPOT_SCORE: NA
HOTSPOT_PERCENTILE: NA
IROC_SCORE: NA
IROC_PERCENTILE: NA
POISSON_SCORE: NA
POISSON_PERCENTILE: NA
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Chondrocytes_from_Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.60.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 62,557,620
FINDPEAKS_SCORE: NA
FINDPEAKS_PERCENTILE: NA
HOTSPOT_SCORE: NA
HOTSPOT_PERCENTILE: NA
IROC_SCORE: NA
IROC_PERCENTILE: NA
POISSON_SCORE: NA
POISSON_PERCENTILE: NA
MAXIMUM_REPLICATE_CORRELATION: NA
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