|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of Placenta Chorion Smooth H3K4me1 ChIP-Seq Data
Illumina H3K4me1 ChIP-Seq read mappings from Placenta Chorion Smooth, Donor CTL02 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/13:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: A21710-1.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Placenta_Chorion_Smooth.H3K4me1.CTL02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: PCS H3K4me1 02 10
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Placenta Chorion Smooth Histone H3K4me1 Donor CTL02 Library A21710 EA Release 9
NUMBER_OF_MAPPED_READS: 24,950,545
FINDPEAKS_SCORE: 0.1209
FINDPEAKS_PERCENTILE: 27
HOTSPOT_SCORE: 0.235
HOTSPOT_PERCENTILE: 23
IROC_SCORE: 0.9276
IROC_PERCENTILE: 29
POISSON_SCORE: 0.4146
POISSON_PERCENTILE: 30
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Placenta_Chorion_Smooth.H3K4me1.CTL02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: PCS H3K4me1 02 10
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Placenta Chorion Smooth Histone H3K4me1 Donor CTL02 Library A21710 EA Release 9
NUMBER_OF_MAPPED_READS: 24,950,545
FINDPEAKS_SCORE: 0.1209
FINDPEAKS_PERCENTILE: 27
HOTSPOT_SCORE: 0.235
HOTSPOT_PERCENTILE: 23
IROC_SCORE: 0.9276
IROC_PERCENTILE: 29
POISSON_SCORE: 0.4146
POISSON_PERCENTILE: 30
MAXIMUM_REPLICATE_CORRELATION: NA
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |