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Raw Signal Density Graphs of Fetal Placenta H3K27ac ChIP-Seq Data
Illumina H3K27ac ChIP-Seq read mappings from Fetal Placenta, Donor H-24996, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/13:
ANALYSIS XML file 'uw.chip-seq.level.2.xml' uploaded
alias: Histone.DS23301-Histone.DS23301.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.Fetal_Placenta.H3K27ac.H-24996.Histone.DS23301.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: FP H3K27ac 96 01
BROWSER_TRACK_DESCRIPTION: UW Fetal Placenta Histone H3K27ac Donor H-24996 Library Histone.DS23301 EA Release 9
NUMBER_OF_MAPPED_READS: 21,653,271
FINDPEAKS_SCORE: 0.4258
FINDPEAKS_PERCENTILE: 65
HOTSPOT_SCORE: 0.4398
HOTSPOT_PERCENTILE: 60
IROC_SCORE: 0.9984
IROC_PERCENTILE: 78
POISSON_SCORE: 0.5013
POISSON_PERCENTILE: 60
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.Fetal_Placenta.H3K27ac.H-24996.Histone.DS23301.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: FP H3K27ac 96 01
BROWSER_TRACK_DESCRIPTION: UW Fetal Placenta Histone H3K27ac Donor H-24996 Library Histone.DS23301 EA Release 9
NUMBER_OF_MAPPED_READS: 21,653,271
FINDPEAKS_SCORE: 0.4258
FINDPEAKS_PERCENTILE: 65
HOTSPOT_SCORE: 0.4398
HOTSPOT_PERCENTILE: 60
IROC_SCORE: 0.9984
IROC_PERCENTILE: 78
POISSON_SCORE: 0.5013
POISSON_PERCENTILE: 60
MAXIMUM_REPLICATE_CORRELATION: NA
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