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Raw Signal Density Graphs of CD4 Primary Cells Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from CD4 Primary Cells, Donor RO 01679, were processed into density graphs of raw signal representing the aligned read density.


Project News:
2013/6/13:
ANALYSIS XML file 'uw.chip-seq.level.2.xml' uploaded



alias: Histone.DS21541-Histone.DS21541.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.CD4_Primary_Cells.Input.RO_01679.Histone.DS21541.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: CD4 Input 79 41
BROWSER_TRACK_DESCRIPTION: UW CD4 Primary Cells ChIP-Seq Input Donor RO 01679 Library Histone.DS21541 EA Release 9
NUMBER_OF_MAPPED_READS: 40,969,799
FINDPEAKS_SCORE: 0.0044
FINDPEAKS_PERCENTILE: 22
HOTSPOT_SCORE: 0.0028
HOTSPOT_PERCENTILE: 8
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.025
POISSON_PERCENTILE: 17
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


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