Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Mapping of Fetal Muscle Leg Input ChIP-Seq Data
Illumina reads produced by Input ChIP-Seq on Fetal Muscle Leg, Donor H-24644, were mapped to the human genome using Pash.


Project News:
2013/6/13:
ANALYSIS XML file 'uw.chip-seq.level.1.xml' uploaded



alias: Histone.DS21509.hg19.level.1.release.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Muscle_Leg.Input.H-24644.Histone.DS21509.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 9
NUMBER_OF_MAPPED_READS: 23,511,773
FINDPEAKS_SCORE: 0.0035
FINDPEAKS_PERCENTILE: 17
HOTSPOT_SCORE: 0.0112
HOTSPOT_PERCENTILE: 49
IROC_SCORE: 0.0
IROC_PERCENTILE: 25
POISSON_SCORE: 0.0426
POISSON_PERCENTILE: 38
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)