|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of Small Intestine Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from Small Intestine, Donor STL002, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/10:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.Input.STL002SB.01.01.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Small_Intestine.Input.STL002.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: SI Input 02 10
BROWSER_TRACK_DESCRIPTION: UCSD Small Intestine ChIP-Seq Input Donor STL002 Library AY510 EA Release 9
NUMBER_OF_MAPPED_READS: 20,545,266
FINDPEAKS_SCORE: 0.01
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.07
HOTSPOT_PERCENTILE: 76
IROC_SCORE: NA
IROC_PERCENTILE: NA
POISSON_SCORE: 0.16
POISSON_PERCENTILE: 83
MAXIMUM_REPLICATE_CORRELATION: 0.97
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Small_Intestine.Input.STL002.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: SI Input 02 10
BROWSER_TRACK_DESCRIPTION: UCSD Small Intestine ChIP-Seq Input Donor STL002 Library AY510 EA Release 9
NUMBER_OF_MAPPED_READS: 20,545,266
FINDPEAKS_SCORE: 0.01
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.07
HOTSPOT_PERCENTILE: 76
IROC_SCORE: NA
IROC_PERCENTILE: NA
POISSON_SCORE: 0.16
POISSON_PERCENTILE: 83
MAXIMUM_REPLICATE_CORRELATION: 0.97
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |