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Raw Signal Density Graphs of Small Intestine H3K27ac ChIP-Seq Data
Illumina H3K27ac ChIP-Seq read mappings from Small Intestine, Donor STL002, were processed into density graphs of raw signal representing the aligned read density.


Project News:
2013/6/10:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded



alias: renlab.H3K27ac.STL002SB.01.01.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Small_Intestine.H3K27ac.STL002.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: SI H3K27ac 02 65
BROWSER_TRACK_DESCRIPTION: UCSD Small Intestine Histone H3K27ac Donor STL002 Library AY365 EA Release 9
NUMBER_OF_MAPPED_READS: 15,360,674
FINDPEAKS_SCORE: 0.3016
FINDPEAKS_PERCENTILE: 31
HOTSPOT_SCORE: 0.3579
HOTSPOT_PERCENTILE: 36
IROC_SCORE: 0.996
IROC_PERCENTILE: 53
POISSON_SCORE: 0.3951
POISSON_PERCENTILE: 23
MAXIMUM_REPLICATE_CORRELATION: 0.98

 

 


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