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Raw Signal Density Graphs of Lung Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from Lung, Donor STL001, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2013/6/10:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.Input.STL001LG.01.01.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Lung.Input.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Lung Input 01 53
BROWSER_TRACK_DESCRIPTION: UCSD Lung ChIP-Seq Input Donor STL001 Library AY353 EA Release 9
NUMBER_OF_MAPPED_READS: 32,884,892
FINDPEAKS_SCORE: 0.0063
FINDPEAKS_PERCENTILE: 63
HOTSPOT_SCORE: 0.0937
HOTSPOT_PERCENTILE: 85
IROC_SCORE: 0.6597
IROC_PERCENTILE: 25
POISSON_SCORE: 0.289
POISSON_PERCENTILE: 89
MAXIMUM_REPLICATE_CORRELATION: 0.97
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Lung.Input.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Lung Input 01 53
BROWSER_TRACK_DESCRIPTION: UCSD Lung ChIP-Seq Input Donor STL001 Library AY353 EA Release 9
NUMBER_OF_MAPPED_READS: 32,884,892
FINDPEAKS_SCORE: 0.0063
FINDPEAKS_PERCENTILE: 63
HOTSPOT_SCORE: 0.0937
HOTSPOT_PERCENTILE: 85
IROC_SCORE: 0.6597
IROC_PERCENTILE: 25
POISSON_SCORE: 0.289
POISSON_PERCENTILE: 89
MAXIMUM_REPLICATE_CORRELATION: 0.97
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