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Raw Signal Density Graphs of Esophagus Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from Esophagus, Donor STL002, were processed into density graphs of raw signal representing the aligned read density.


Project News:
2013/6/10:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded



alias: renlab.Input.STL002EG.01.01-renlab.Input.STL002EG.02.01.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Esophagus.Input.STL002.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Esophagus Input 02 74
BROWSER_TRACK_DESCRIPTION: UCSD Esophagus ChIP-Seq Input Donor STL002 Library CY174 EA Release 9
NUMBER_OF_MAPPED_READS: 42,410,861
FINDPEAKS_SCORE: 0.01
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.02
HOTSPOT_PERCENTILE: 59
IROC_SCORE: 0.78
IROC_PERCENTILE: 32
POISSON_SCORE: 0.16
POISSON_PERCENTILE: 83
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


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