Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Raw Signal Density Graphs of Bladder Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from Bladder, Donor STL003, were processed into density graphs of raw signal representing the aligned read density.


Project News:
2013/6/10:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded



alias: renlab.Input.STL003BL.02.01-renlab.Input.STL003BL.01.01.hg19.level.2.release.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Bladder.Input.STL003.CY49.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 9
BROWSER_TRACK_NAME: Bladder Input 03 49
BROWSER_TRACK_DESCRIPTION: UCSD Bladder ChIP-Seq Input Donor STL003 Library CY49 EA Release 9
NUMBER_OF_MAPPED_READS: 25,221,478
FINDPEAKS_SCORE: 0.01
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.02
HOTSPOT_PERCENTILE: 59
IROC_SCORE: 0.9677
IROC_PERCENTILE: 60
POISSON_SCORE: 0.07
POISSON_PERCENTILE: 52
MAXIMUM_REPLICATE_CORRELATION: 0.98

 

 


Bioinformatics Research Laboratory
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Free open source code is available here.
 
© 2001-2022 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)
Questions or comments?