|
|||||||||
Mapping of Lung Input ChIP-Seq Data
Illumina reads produced by Input ChIP-Seq on Lung, Donor STL001, were mapped to the human genome using Pash.
Project News:
2013/6/10: ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.Input.STL001LG.01.01.hg19.level.1.release.9
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSD.Lung.Input.STL001.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 9 NUMBER_OF_MAPPED_READS: 32,884,892 FINDPEAKS_SCORE: 0.0063 FINDPEAKS_PERCENTILE: 63 HOTSPOT_SCORE: 0.0937 HOTSPOT_PERCENTILE: 85 IROC_SCORE: 0.6597 IROC_PERCENTILE: 25 POISSON_SCORE: 0.289 POISSON_PERCENTILE: 89 MAXIMUM_REPLICATE_CORRELATION: 0.97 |
|||||||||
|
|||||||||