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Raw Signal Density Graphs of Penis Foreskin Fibroblast Primary Cells H3K4me1 ChIP-Seq Data
Illumina H3K4me1 ChIP-Seq read mappings from Penis Foreskin Fibroblast Primary Cells, Donor skin03 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/9/28:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.additional.xml' uploaded
alias: A15565-1.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.H3K4me1.skin03.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: PFF H3K4me1 03 65
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K4me1 Donor skin03 Library A15565 EA Release 8
NUMBER_OF_MAPPED_READS: 67,659,491
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 15
FINDPEAKS_SCORE: 0.1658
FINDPEAKS_PERCENTILE: 27
HOTSPOT_SCORE: 0.2433
HOTSPOT_PERCENTILE: 20
IROC_SCORE: 0.9406
IROC_PERCENTILE: 27
POISSON_SCORE: 0.4397
POISSON_PERCENTILE: 27
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.H3K4me1.skin03.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: PFF H3K4me1 03 65
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells Histone H3K4me1 Donor skin03 Library A15565 EA Release 8
NUMBER_OF_MAPPED_READS: 67,659,491
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 15
FINDPEAKS_SCORE: 0.1658
FINDPEAKS_PERCENTILE: 27
HOTSPOT_SCORE: 0.2433
HOTSPOT_PERCENTILE: 20
IROC_SCORE: 0.9406
IROC_PERCENTILE: 27
POISSON_SCORE: 0.4397
POISSON_PERCENTILE: 27
MAXIMUM_REPLICATE_CORRELATION: 0.99
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