|
|
| Home | Browser | Tools | Log Out |
Help
|
Raw Signal Density Graphs of Penis Foreskin Melanocyte Primary Cells Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from Penis Foreskin Melanocyte Primary Cells, Donor skin03 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/9/28:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.additional.xml' uploaded
alias: A15585-1.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Penis_Foreskin_Melanocyte_Primary_Cells.Input.skin03.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: PFM Input 03 85
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells ChIP-Seq Input Donor skin03 Library A15585 EA Release 8
NUMBER_OF_MAPPED_READS: 57,996,366
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
FINDPEAKS_SCORE: 0.0035
FINDPEAKS_PERCENTILE: 9
HOTSPOT_SCORE: 0.0079
HOTSPOT_PERCENTILE: 9
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.0496
POISSON_PERCENTILE: 9
MAXIMUM_REPLICATE_CORRELATION: 0.98
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Penis_Foreskin_Melanocyte_Primary_Cells.Input.skin03.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: PFM Input 03 85
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells ChIP-Seq Input Donor skin03 Library A15585 EA Release 8
NUMBER_OF_MAPPED_READS: 57,996,366
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
FINDPEAKS_SCORE: 0.0035
FINDPEAKS_PERCENTILE: 9
HOTSPOT_SCORE: 0.0079
HOTSPOT_PERCENTILE: 9
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.0496
POISSON_PERCENTILE: 9
MAXIMUM_REPLICATE_CORRELATION: 0.98
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|