|
|
| Home | Browser | Tools | Log Out |
Help
|
Raw Signal Density Graphs of Penis Foreskin Melanocyte Primary Cells MeDIP-Seq Data
Illumina MeDIP-Seq read mappings from Penis Foreskin Melanocyte Primary Cells, Donor skin03 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/9/6:
ANALYSIS XML file 'ucsf-ubc.medip.level.2.xml' uploaded
alias: A14102-1.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Penis_Foreskin_Melanocyte_Primary_Cells.MeDIP-Seq.skin03.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: PFM MeDIP 03 02
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells MeDIP-Seq Donor skin03 Library A14102 EA Release 8
NUMBER_OF_MAPPED_READS: 39,719,547
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.6036
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.5769
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9931
IROC_PERCENTILE: 100
POISSON_SCORE: 0.6141
POISSON_PERCENTILE: 33
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Penis_Foreskin_Melanocyte_Primary_Cells.MeDIP-Seq.skin03.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: PFM MeDIP 03 02
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Penis Foreskin Melanocyte Primary Cells MeDIP-Seq Donor skin03 Library A14102 EA Release 8
NUMBER_OF_MAPPED_READS: 39,719,547
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.6036
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.5769
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9931
IROC_PERCENTILE: 100
POISSON_SCORE: 0.6141
POISSON_PERCENTILE: 33
MAXIMUM_REPLICATE_CORRELATION: 0.99
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|