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Raw Signal Density Graphs of Penis Foreskin Fibroblast Primary Cells MeDIP-Seq Data
Illumina MeDIP-Seq read mappings from Penis Foreskin Fibroblast Primary Cells, Donor skin03 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/9/6:
ANALYSIS XML file 'ucsf-ubc.medip.level.2.xml' uploaded
alias: A14100-1.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.MeDIP-Seq.skin03.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: PFF MeDIP 03 00
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells MeDIP-Seq Donor skin03 Library A14100 EA Release 8
NUMBER_OF_MAPPED_READS: 43,116,989
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.6151
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5764
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.9924
IROC_PERCENTILE: 67
POISSON_SCORE: 0.6201
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.MeDIP-Seq.skin03.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: PFF MeDIP 03 00
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Penis Foreskin Fibroblast Primary Cells MeDIP-Seq Donor skin03 Library A14100 EA Release 8
NUMBER_OF_MAPPED_READS: 43,116,989
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.6151
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5764
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.9924
IROC_PERCENTILE: 67
POISSON_SCORE: 0.6201
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.99
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