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Mapping of Penis Foreskin Fibroblast Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Penis Foreskin Fibroblast Primary Cells, Donor skin03 were mapped to the human genome using Pash.
Project News:
2012/9/6:
ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded
alias: A14100-1.hg19.level.1.release.8
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.MeDIP-Seq.skin03.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 43,116,989
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.6151
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5764
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.9924
IROC_PERCENTILE: 67
POISSON_SCORE: 0.6201
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.MeDIP-Seq.skin03.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 43,116,989
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.6151
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5764
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.9924
IROC_PERCENTILE: 67
POISSON_SCORE: 0.6201
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.99
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