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Raw Signal Density Graphs of Neurosphere Cultured Cells Ganglionic Eminence Derived mRNA-Seq Data
Illumina mRNA-Seq read mappings from Neurosphere Cultured Cells Ganglionic Eminence Derived, Donor HuFNSC04 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/8/29:
ANALYSIS XML file 'ucsf.mrna-seq.level.2.xml' uploaded
alias: A15299-1.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.mRNA-Seq.HuFNSC04.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: NGED mRNA 04 99
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived mRNA-Seq Donor HuFNSC04 Library A15299 EA Release 8
NUMBER_OF_MAPPED_READS: 313,871,523
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
PERCENT_READS_MAPPING_TO_UCSC_GENES: 94.23
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 95
MAXIMUM_REPLICATE_CORRELATION: 0.73
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.mRNA-Seq.HuFNSC04.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: NGED mRNA 04 99
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived mRNA-Seq Donor HuFNSC04 Library A15299 EA Release 8
NUMBER_OF_MAPPED_READS: 313,871,523
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
PERCENT_READS_MAPPING_TO_UCSC_GENES: 94.23
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 95
MAXIMUM_REPLICATE_CORRELATION: 0.73
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