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Raw Signal Density Graphs of UCSF-4star Cell Line mRNA-Seq Data
Illumina mRNA-Seq read mappings from the UCSF-4star Cell Line, Library A11831 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/8/29:
ANALYSIS XML file 'ucsf.mrna-seq.level.2.xml' uploaded
alias: A11831-1.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.UCSF-4star.mRNA-Seq.A11831.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: UCSF4* mRNA 31
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC UCSF-4* Cell Line mRNA-Seq Library A11831 EA Release 8
NUMBER_OF_MAPPED_READS: 377,507,263
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
PERCENT_READS_MAPPING_TO_UCSC_GENES: 87.83
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 41
MAXIMUM_REPLICATE_CORRELATION: 0.65
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.UCSF-4star.mRNA-Seq.A11831.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: UCSF4* mRNA 31
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC UCSF-4* Cell Line mRNA-Seq Library A11831 EA Release 8
NUMBER_OF_MAPPED_READS: 377,507,263
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
PERCENT_READS_MAPPING_TO_UCSC_GENES: 87.83
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 41
MAXIMUM_REPLICATE_CORRELATION: 0.65
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