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Mapping of UCSF-4* Cell Line mRNA-Seq Data
Illumina reads produced by mRNA-Seq on the UCSF-4* Cell Line, Library A11831 were mapped to the human genome using Pash.
Project News:
2012/8/29:
ANALYSIS XML file 'ucsf.mrna-seq.level.1.xml' uploaded
alias: A11831-1.hg19.level.1.release.8
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.UCSF-4star.mRNA-Seq.A11831.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 377,507,263
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
PERCENT_READS_MAPPING_TO_UCSC_GENES: 87.83
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 41
MAXIMUM_REPLICATE_CORRELATION: 0.65
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.UCSF-4star.mRNA-Seq.A11831.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 377,507,263
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 22
PERCENT_READS_MAPPING_TO_UCSC_GENES: 87.83
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 41
MAXIMUM_REPLICATE_CORRELATION: 0.65
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